Data Space Catalogue
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What is the OmicSpace Data Space Catalogue?
The OmicSpace catalogue is a tool designed to facilitate the discovery and understanding of datasets in biomedical research and omics sciences.
It allows users to:
Discover available datasets
Learn about their key characteristics
Evaluate their usefulness for research projects
Can’t find the dataset you’re looking for?
The OmicSpace catalogue is a continuously evolving environment. Due to the varying levels of digitalization across nodes, some datasets may not yet be available or published.
If you cannot find the dataset you need, you can contact us indicating your interest. Our team will assess the feasibility of your request and, where possible, support the creation or incorporation of the dataset into the catalogue.
The Instituto de Investigación Sanitaria La Fe (IIS La Fe) is the biomedical research arm created jointly by the University and Polytechnic Hospital La Fe, the Universitat de València, the Universitat Politècnica de València, the Foundation for Research of the La Fe University Hospital, and the IVI Foundation.
IIS LA FE DATA SPACE CATALOGUE
Data Source Name
Nª Records
First Record Date
Last Record Date
Update Frequency
Description
Alumbra Gaia
211.365.032
01/01/2016
01/01/2016
Monthly
PROSIGA (SIA-GAIA) is the information system for outpatient care of the Regional Ministry of Health. Through this channel, research staff can request the data they need from patients’ clinical records, both from primary and specialized care.
Alumbra SIA
166.372.966
01/01/2000
30/04/2026
Monthly
Alumbra (SIA) is an information system that enables the management and access to structured data within the healthcare domain. Through this platform, authorized personnel can consult and exploit available information to support research, analysis, and decision-making.
Pathological Anatomy
2.402.420
02/01/2010
27/05/2026
Daily
Database containing information from pathology studies for diagnosis and analysis.
Blood Bank
1.125.282
01/01/2014
26/05/2026
Daily
Database containing data to manage donation and use of blood components.
BI Casuistics 9_10
6.853.969
14/11/2009
31/12/2021
Static
Database containing information on clinical episodes for casuistic analysis.
Critical Care BI
85.123
01/02/2000
26/05/2026
Daily
Database containing data of patients in intensive care units.
Clinical Trials
62.610
02/01/2008
26/05/2026
Daily
Database containing information on patients and treatments in clinical trials.
Scales
33.366.684
02/01/2012
27/05/2026
Daily
Database containing results of clinical assessment scales for patients.
Home Hospitalization (HAD)
3.337.794
02/01/2012
27/05/2026
Daily
Database containing data to manage home hospital care.
Day Hospital (HDD)
2.065.150
02/01/2012
30/05/2026
Daily
Database containing data on healthcare activity in a day hospital.
Clinical Reports OC
84.161.843
02/01/2006
27/05/2026
Daily
Database containing clinical reports for consultation and management.
Oncort (Radiation Oncology)
452.411
10/01/2012
09/01/2025
Static
Database containing data on radiotherapy treatments for oncology patients.
Prostheses
218.671
02/01/2013
30/04/2026
Monthly
Database containing information on implantation and follow-up of prostheses.
Operating Room (Surgery)
4.925.593
01/01/2010
27/05/2026
Daily
Database containing data on surgical activity and procedures.
Nursing Homes
7.718.109
01/03/2020
12/04/2026
Static
Database containing healthcare information of patients in nursing homes.
Outpatient Consultations
30.576.425
04/03/2003
28/05/2026
Daily
Database containing outpatient care data in external consultations.
Hospital Pharmacy
31.535.513
15/12/2011
28/05/2026
Daily
Database containing information on medications and their management in the hospital.
Hospitalization
8.365.023
17/11/2020
25/05/2026
Daily
Database containing data on hospital admissions and stays.
Imaging
13.031.071
04/01/2020
28/05/2026
Daily
Database containing diagnostic imaging tests.
Laboratory
479.434.169
13/12/2011
27/05/2026
Daily
Database containing clinical test results.
Global Morbidity
119.894.488
06/08/1980
26/05/2026
Daily
Database containing information on diseases and health conditions.
COVID Cohort
2.431.500
02/03/2020
22/09/2025
Static
Database containing data on patients and COVID-19 cases for monitoring and analysis.
Oncofarm
3.610.932
09/12/2010
27/05/2026
Daily
Database containing data on oncological pharmacological treatments.
SIPCRC
11.606.063
09/03/1993
27/05/2026
Daily
Database containing information for patient identification and follow-up.
Emergency
4.421.551
01/01/2010
28/05/2026
Daily
Database containing data on healthcare activity in emergency services.
person – OMOP
2.193.036
15/01/1851
15/03/2026
Monthly
Contains records that uniquely identify each patient.
observation_period – OMOP
1.893.381
01/08/1932
02/06/2026
Monthly
Defines the time periods during which a person’s clinical events are expected to be completely captured in the system.
visit_occurrence – OMOP
70.507.493
26/06/1982
02/06/2026
Monthly
Stores periods during which a person receives continuous healthcare within a setting.
visit_detail – OMOP
1.697.340
01/02/2000
27/04/2026
Monthly
Provides a more granular level within a visit, capturing sub-stays or internal movements.
condition_occurrence – OMOP
89.314.689
01/01/1970
31/03/2026
Monthly
Records medical conditions, diseases, or diagnoses affecting a person during a visit or observation period.
drug_exposure – OMOP
180.421.571
19/08/2001
02/06/2026
Monthly
Contains records of drug exposure, whether prescribed or administered to the patient.a medicamentos, ya sea prescritos o administrados al paciente.
procedure_occurrence – OMOP
29.476.785
03/02/1983
30/04/2026
Monthly
Includes performed medical procedures.
device_exposure – OMOP
9.624.829
04/01/2000
30/04/2026
Monthly
Records exposure to or use of medical devices in patients.
measurement – OMOP
503.173.178
17/01/1993
23/04/2026
Monthly
Contains structured clinical measurements such as lab results or vital signs.
observation – OMOP
20.149.896
01/01/1970
28/04/2026
Monthly
Includes additional clinical information not captured in other tables, such as general observations, habits, or questionnaires.
death – OMOP
308.113
01/08/1932
17/03/2026
Monthly
Records death events, including date and cause when available.
note – OMOP
46.550.158
02/01/2006
27/04/2026
Monthly
Stores free-text clinical data such as medical reports or progress notes.
specimen – OMOP
23.664.069
16/03/1999
23/04/2026
Monthly
Contains information about biological samples collected from patients.
location – OMOP
12.904
–
–
Static
Describes the geographic location associated with patients or healthcare sites.
care_site – OMOP
872
–
–
Static
Represents the healthcare institution or unit where services are provided.
provider – OMOP
4.746
–
–
Static
Contains information about healthcare professionals involved in care.
cost – OMOP
97.699.580
–
–
Monthly
Records costs associated with clinical events and healthcare services.
drug_era – OMOP
15.778.741
01/01/2012
02/06/2026
Monthly
Aggregates individual drug exposures into continuous treatment periods.
condition_era – OMOP
39.949.230
01/01/1970
01/04/2026
Monthly
Groups repeated diagnoses into a continuous disease period.
concept – OMOP
1.956.194
01/01/1970
27/05/2026
Static
Contains all standardized clinical concepts used in OMOP.
vocabulary – OMOP
114
–
–
Static
Defines source vocabularies.
domain – OMOP
50
–
–
Static
Classifies concepts into clinical domains.
concept_class – OMOP
423
–
–
Static
Classifies concepts into clinical domains.
concept_relationship – OMOP
51.472.806
–
–
Static
Categorizes concepts within each vocabulary.
relationship – OMOP
696
–
–
Static
Defines relationships between concepts.
concept_synonym – OMOP
3.480.693
–
–
Static
Contains synonyms of concepts to facilitate search and mapping.
concept_ancestor – OMOP
83.065.011
–
–
Static
Defines hierarchical relationships between concepts, enabling parent-child navigation.
source_to_concept_map – OMOP
40.055
–
–
Static
Defines hierarchical relationships between concepts, enabling parent-child navigation.
The Aragonese Institute of Health Sciences (IACS) is the entity that promotes knowledge in Biomedicine and Health Sciences in Aragón. Its establishment is based on Law 6/2002 of April 15, on Health in Aragón, which states that IACS is a public law entity attached to the department responsible for Health of the Government of Aragón and grants it legal personality and its own assets.
Approximate number of patients:
1.4 million
Data time window:
2012 – present
Update frequency:
Daily
Data typology:
EHR, Biobank, Laboratory, Tumor registry, Vaccine registry, Genomic data from specific non-sequenced tests, Survival
Standards used:
OMOP CDM (5.4)
Vocabularies and ontologies:
OMIM, ATC, ORPHANET
Infraestructure:
BBDD no-SQL, BBDD relacional
Healthcare coverage:
Primary care, Specialized primary care, Outpatient specialized care, Hospitalization, External consultations, Emergency care
OTHER CATEGORIES
Clinical elements collected
Disease-specific information, Hospital discharge, ICU admission, Prescription, Dispensing, Contraception, Vaccine administration, Clinical measurements, Healthcare provider, Genetic data, Biomarker data, Patient-reported outcomes (PRO), Unique person identifiers, Diagnostic codes, Pregnancy and neonates, Procedures
Age groups included
All ages
Available demographic information
Age, Sex/Gender, Country of origin, Health area, Geographic and healthcare location
Lifestyle factors
Tobacco use, Alcohol consumption, Diet, Physical activity
Additional relevant information
Genomic data are currently being integrated
Availability of associated biobank
Partial / ad hoc linkage
Availability of sample metadata
Partially
Available omics information
Partially
The La Paz University Hospital Health Research Institute (IdiPAZ) is conceived as a multidisciplinary and translational biomedical research space focused on basic, clinical, epidemiological, and health services research. It is the result of the collaboration between La Paz University Hospital (HULP), the Autonomous University of Madrid (UAM), Getafe University Hospital (HUG), Universidad Europea (EU), and the Foundation for Biomedical Research of La Paz University Hospital (FIBHULP).
Approximate number of patients:
558
Data time window:
01/09/2024–31/08/2025
Update frequency:
Self-updated
Data typology:
Genomic data; omics data
Standards used:
Local format
OTHER CATEGORIES
Local format
Outpatient consultations
Clinical elements collected
Unique person identifiers; Genetic data
Age groups included
Adults (18–45, 46–64, 65–74, 75–84, ≥85 years)
Lifestyle factors
Not collected
Availability of associated biobank
Yes, but not linked to the electronic health record (EHR)
Availability of sample metadata
Sociodemographic data
Available omics information
Genomics
Type of genomic analysis implemented
Pharmacogenomics
Approximate number of patients:
4.500
Data time window:
2015 – 2026
Update frequency:
Quarterly
Data typology:
Biobank data
Standards used:
OMOP CDM (v5.3)
Clinical terminologies:
ICD-10, SNOMED CT
Infraestructure:
Relational database and NoSQL database
Healthcare coverage:
Hospitalization; outpatient consultations
OTHER CATEGORIES
Clinical elements collected
Rare diseases; hospital discharge; prescriptions; biomarker data; diagnostic codes; disease-specific information; lifestyle habits
Age groups included
Pediatric population (<18 years), children (2–11 years), adolescents (12–17 years), adults (18–45 years, 46–64 years), elderly (65–74 years, 75–84 years, ≥85 years)
Available demographic information
Age; sex/gender; health area
Lifestyle factors
Tobacco use, Alcohol consumption, Diet, Physical activity
Availability of associated biobank
Partial / ad hoc linkage
Availability of sample metadata
Associated clinical data
Available omics information
Genomics
Type of genomic analysis implemented
Whole exome sequencing (WES)
Available datasets and characteristics
IMIB Biobank, composed of multiple datasets related to cardiovascular, hematological, neurological, neoplastic, infectious diseases, and rare diseases
Are you a new user?
Already registered?
If you already have an account, access the catalog directly to explore the available datasets:
Can’t find the dataset you’re looking for?
Do you have questions about the catalogue?
Contact us and we’ll help you resolve any questions:
omicspace@iislafe.es
You can also call us at +34 961 41 16 92 (246607)
We look forward to hearing from you!
Catálogo de Espacio de Datos
El catálogo de OmicSpace es una herramienta diseñada para facilitar la búsqueda y comprensión de conjuntos de datos en investigación biomédica y ciencias ómicas.
Permite a los usuarios:
- Descubrir datos disponibles
- Conocer sus características principales
- Evaluar su utilidad para proyectos de investigación
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Accede a nuestro catálogo de datos solicitando acceso a través del siguiente enlace. Una vez validada tu solicitud, podrás consultar todos los contenidos disponibles:
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¿No encuentras el dataset que buscas?
El catálogo de OmicSpace es un entorno en constante evolución. Debido al nivel de digitalización de los distintos nodos, es posible que algunos conjuntos de datos aún no estén disponibles o publicados.
Si no encuentras el dataset que necesitas, puedes contactarnos indicando tu interés. Nuestro equipo evaluará la viabilidad de la solicitud y, en su caso, podrá impulsar la generación o incorporación del activo en el catálogo.
¿Tienes dudas sobre el catálogo?
Contáctanos y te ayudamos a resolver tus dudas:
omicspace@iislafe.es
También puedes llamarnos y contarnos en el +34 961 41 16 92 (246607)